The report was generated using the JSEQ_scRNAseq single-cell analysis pipeline. For more information, please visit: https://github.com/jkubis96/JSEQ_scRNAseq


1 Analysis Configuration Parameters

Parameter Value
mt_per 25
scale_factor 1e+06
n_features 1500
c_res 0.5
heterogeneity var
mt_cssg FALSE
m_val 0.05
top_m 50
max_genes 1000
max_combine 1000
loss_val 0.05
s_factor 0.7
p_bin 0.1
drop TRUE
min_c 10

The parameters above were used during the current analysis.
If you need to apply different analysis conditions, modify the parameters in the configuration file.

Parameters description:

  • mt_per
    Maximum percentage of mitochondrial genes per cell.
    Default: 25%
  • down
    Lower threshold for the number of genes per cell.
    Default: NA (automatically computed if NA)
  • up
    Upper threshold for the number of genes per cell.
    Default: NA (automatically computed if NA)
  • scale_factor
    Scale factor used for data normalization.
  • n_features
    Number of variable features to detect for clustering.
  • c_res
    Clustering resolution — higher values produce more clusters.
  • heterogeneity
    Method for estimating cluster heterogeneity.
    Options: var (within-cluster variance), deg (deregulated gene profiles).
    Default: deg
  • mt_cssg
    Whether to include mitochondrial genes when creating subclasses and subtypes.
    Options: TRUE, FALSE.
    Default: FALSE
  • m_val
    Maximum p-value threshold for marker detection in advanced subtype analyses.
    Default: 0.05
  • top_m
    Maximum number of top markers used for naming clusters based on effect size metrics.
    Default: 50
  • max_genes
    Maximum number of input genes considered in cluster heterogeneity discovery.
    Default: 1000
  • max_combine
    Maximum number of initial combinations for each iteration during heterogeneity discovery.
    Default: 1000
  • loss_val
    Assigned value for potentially unclassified cells within a cluster.
  • s_factor
    Maximum split factor for gene occurrence in heterogeneity discovery (0.2–1).
    Default: 0.8
  • p_bin
    Minimum cell proportion required for population presence based on binomial test p-value.
    Default: 0.05
  • min_c
    Minimum cell proportion required for population presence as defined by the user (independent of binomial test).
    Default: 10
  • drop
    Boolean indicating whether to drop non-significant subtypes based on p_bin and min_c.
    Default: TRUE

The configuration file is available in the directory:
JSEQ_scRNAseq/requirements_file/config_file.conf

Additional configuration files for other analysis steps can also be found in:
JSEQ_scRNAseq/requirements_file

For more information, please visit:
https://github.com/jkubis96/JSEQ_scRNAseq



2 Cell content analysis

2.1 Read distribution across genomic features

2.2 Count (UMI) per barcode (cell)

2.3 Cell barcode knee plot

The above graph illustrates general trends and quality metrics at the initial stage of single-cell analysis; however, it does not represent the final number of detected cells.

2.4 Ratio of number of genes to counts

2.5 Number of genes and counts per cell

2.6 Percentage of ribosomal and mitochondrial genes [%]



3 Quality control of cell content

3.1 Genes per cell content & thresholds

3.2 Genes upper & lower thresholds per cell

3.3 Number of cells across different stages of analysis



4 Gene expression analysis across cells

4.1 Top highly variable genes in the dataset



5 Princilpe component selection

5.1 ElbowPlot - principal components cutoff

5.2 JackStrawPlot - PC significance



6 Cells clustering

6.1 UMAP clusters



7 Subclasses identification based on marker genes

7.1 PCA cisualization of subclasses

7.2 UMAP visualization of subclasses

7.3 Subclasses - cell composition


7.4 Subclasses markers - top 25


Top 25 merkers
genes pct_occurrence esm avg_logFC p_val cluster p_adj_bf p_adj_bh subclass
Olfr1109 0.6086957 1.9878657 3.4854653 0.0000000 1 0.000000 0.0000000 ChP Ttr Cdh23.var1
Marchf1 0.6884058 1.9710418 3.0294959 0.0000000 1 0.000000 0.0000000 ChP Ttr Cdh23.var1
Gm32067 0.7101449 1.9579948 2.9026783 0.0000000 1 0.000000 0.0000000 ChP Ttr Cdh23.var1
Gm12679 0.3840580 1.4744475 3.7123924 0.0000000 1 0.000000 0.0000000 ChP Ttr Cdh23.var1
4931429P17Rik 0.5217391 1.3727334 2.6412906 0.0000000 1 0.000000 0.0000000 ChP Ttr Cdh23.var1
Cdk8 0.7681159 1.3261945 1.7378255 0.0000000 1 0.000000 0.0000000 ChP Ttr Cdh23.var1
Usp54 0.5144928 1.2946276 2.4631898 0.0000000 1 0.000000 0.0000000 ChP Ttr Cdh23.var1
Onecut2 0.6376812 1.2884608 2.0152947 0.0000000 1 0.000000 0.0000000 ChP Ttr Cdh23.var1
Prune2 0.3695652 1.2867379 3.2566919 0.0000000 1 0.000000 0.0000000 ChP Ttr Cdh23.var1
Fbxo17 0.3623188 1.2679458 3.2335696 0.0000000 1 0.000000 0.0000000 ChP Ttr Cdh23.var1
Scnn1g 0.5942029 1.2575388 2.0985231 0.0000000 1 0.000000 0.0000000 ChP Ttr Cdh23.var1
D630023O14Rik 0.2463768 1.2442233 4.7207965 0.0000000 1 0.000000 0.0000000 ChP Ttr Cdh23.var1
Rnf19a 0.3478261 1.2276093 3.1409743 0.0000000 1 0.000000 0.0000000 ChP Ttr Cdh23.var1
Ccdc60 0.4565217 1.2127943 2.5582660 0.0000000 1 0.000000 0.0000000 ChP Ttr Cdh23.var1
Flt3 0.2246377 1.2003254 4.8151443 0.0000000 1 0.000000 0.0000000 ChP Ttr Cdh23.var1
Fmnl2 0.6884058 1.1916697 1.7253364 0.0000000 1 0.000000 0.0000000 ChP Ttr Cdh23.var1
Pvr 0.4347826 1.1767493 2.5525926 0.0000000 1 0.000000 0.0000000 ChP Ttr Cdh23.var1
Cux2 0.3115942 1.1727054 3.2746962 0.0000000 1 0.000000 0.0000000 ChP Ttr Cdh23.var1
Tor3a 0.6304348 1.1684338 1.8394042 0.0000000 1 0.000000 0.0000000 ChP Ttr Cdh23.var1
Gm28140 0.2463768 1.1455824 4.0332020 0.0000000 1 0.000000 0.0000000 ChP Ttr Cdh23.var1
Arhgap18 0.3188406 1.1291479 3.0822461 0.0000000 1 0.000000 0.0000000 ChP Ttr Cdh23.var1
AW554918 0.4420290 1.1117224 2.3652341 0.0000000 1 0.000000 0.0000000 ChP Ttr Cdh23.var1
Rtkn 0.2173913 1.0803892 4.1782325 0.0000000 1 0.000000 0.0000000 ChP Ttr Cdh23.var1
Dpp10.var1 0.2753623 1.0594753 3.1716686 0.0000000 1 0.000000 0.0000000 ChP Ttr Cdh23.var1
Gcn1 0.2318841 1.0357342 3.5232812 0.0000000 1 0.000000 0.0000000 ChP Ttr Cdh23.var1
mt-Rnr2 0.9955817 1.0405931 0.1664315 0.0000000 0 0.000000 0.0000000 ChP Ttr Mt-rnr2
Gm33838 0.0486009 0.1701451 1.6347818 0.0420775 0 1.000000 0.3221777 ChP Ttr Mt-rnr2
mt-Rnr1 0.5508100 0.0273235 0.0351907 0.0005811 0 0.029054 0.0145270 ChP Ttr Mt-rnr2
Miat 0.4523810 1.9586545 4.4605944 0.0000000 2 0.000000 0.0000000 CTX Foxg1 Psip1
Pabpn1 0.4880952 1.9433990 4.1717554 0.0000000 2 0.000000 0.0000000 CTX Foxg1 Psip1
Psip1 0.7500000 1.8913898 2.9266833 0.0000000 2 0.000000 0.0000000 CTX Foxg1 Psip1
Slc17a9 0.3690476 1.8890525 4.9291988 0.0000000 2 0.000000 0.0000000 CTX Foxg1 Psip1
Dgki.var1 0.3690476 1.8778258 4.9190083 0.0000000 2 0.000000 0.0000000 CTX Foxg1 Psip1
Ip6k2 0.4404762 1.8634589 4.3017955 0.0000000 2 0.000000 0.0000000 CTX Foxg1 Psip1
Prpf38b 0.5238095 1.8516794 3.7757320 0.0000000 2 0.000000 0.0000000 CTX Foxg1 Psip1
Wsb1 0.5714286 1.8439324 3.5834624 0.0000000 2 0.000000 0.0000000 CTX Foxg1 Psip1
Arglu1 0.7023810 1.8294748 3.0485538 0.0000000 2 0.000000 0.0000000 CTX Foxg1 Psip1
Gm47283 0.6547619 1.8010876 3.1402450 0.0000000 2 0.000000 0.0000000 CTX Foxg1 Psip1
Vopp1 0.3928571 1.7645710 4.4501792 0.0000000 2 0.000000 0.0000000 CTX Foxg1 Psip1
Vbp1 0.4761905 1.7627154 3.9040783 0.0000000 2 0.000000 0.0000000 CTX Foxg1 Psip1
Zfp451 0.3571429 1.7567456 4.7797544 0.0000000 2 0.000000 0.0000000 CTX Foxg1 Psip1
Cbx5 0.5714286 1.7528262 3.3909376 0.0000000 2 0.000000 0.0000000 CTX Foxg1 Psip1
4930556G01Rik 0.2738095 1.7492084 6.2147004 0.0000000 2 0.000000 0.0000000 CTX Foxg1 Psip1
Dbn1 0.6190476 1.7472878 3.2198210 0.0000000 2 0.000000 0.0000000 CTX Foxg1 Psip1
Nfix 0.6428571 1.7373297 3.0269233 0.0000000 2 0.000000 0.0000000 CTX Foxg1 Psip1
Lrrc58 0.4642857 1.7351726 3.8912336 0.0000000 2 0.000000 0.0000000 CTX Foxg1 Psip1
Rsrp1 0.5476190 1.7348151 3.5206902 0.0000000 2 0.000000 0.0000000 CTX Foxg1 Psip1
Khdrbs1 0.6785714 1.7340392 2.9272743 0.0000000 2 0.000000 0.0000000 CTX Foxg1 Psip1
Zfp422 0.5833333 1.7323952 3.3388008 0.0000000 2 0.000000 0.0000000 CTX Foxg1 Psip1
Zfand5 0.5357143 1.7207853 3.5237426 0.0000000 2 0.000000 0.0000000 CTX Foxg1 Psip1
Cdk4 0.7500000 1.7193795 2.7062405 0.0000000 2 0.000000 0.0000000 CTX Foxg1 Psip1
Scn1a 0.2976190 1.7183821 5.4096834 0.0000000 2 0.000000 0.0000000 CTX Foxg1 Psip1
Pdcl 0.3928571 1.7092587 4.2585691 0.0000000 2 0.000000 0.0000000 CTX Foxg1 Psip1


7.5 Heatmap of cell subclasses - log(CPM + 1)

7.6 Heatmap of cell subclasses - scale(log(CPM + 1))




8 Subtypes identification based on CSSG genes

8.1 UMAP visualization


8.2 Subtypes - cell composition


8.3 Subtypes markers - top 25


Top 25 markers
genes pct_occurrence esm avg_logFC p_val subtype p_adj_bf p_adj_bh cluster
Olfr1109 0.6714286 2.0606402 3.0947671 0.0000000 ChP Ttr Cdh23.var1 - Zfp263 0.0000000 0.0000000 1
Gm32067 0.7714286 1.9262045 2.6006017 0.0000000 ChP Ttr Cdh23.var1 - Zfp263 0.0000000 0.0000000 1
Marchf1 0.7142857 1.8417883 2.6332989 0.0000000 ChP Ttr Cdh23.var1 - Zfp263 0.0000000 0.0000000 1
Zfp263 1.0000000 1.8383772 1.9328180 0.0000000 ChP Ttr Cdh23.var1 - Zfp263 0.0000000 0.0000000 1
Gm12679 0.4571429 1.7121106 3.3441723 0.0000000 ChP Ttr Cdh23.var1 - Zfp263 0.0000000 0.0000000 1
Cux2 0.3857143 1.4816246 3.1813160 0.0000000 ChP Ttr Cdh23.var1 - Zfp263 0.0000000 0.0000000 1
Prune2 0.4285714 1.4805624 3.0056878 0.0000000 ChP Ttr Cdh23.var1 - Zfp263 0.0000000 0.0000000 1
Scnn1g 0.6857143 1.4595260 2.1289618 0.0000000 ChP Ttr Cdh23.var1 - Zfp263 0.0000000 0.0000000 1
D630023O14Rik 0.2857143 1.3992774 3.7338665 0.0000000 ChP Ttr Cdh23.var1 - Zfp263 0.0000000 0.0000000 1
Gm19220 0.2142857 1.3974426 4.5056794 0.0000000 ChP Ttr Cdh23.var1 - Zfp263 0.0000000 0.0000000 1
Flt3 0.2714286 1.3890059 3.8481271 0.0000000 ChP Ttr Cdh23.var1 - Zfp263 0.0000000 0.0000000 1
Fbxo17 0.4000000 1.3687904 2.9115557 0.0000000 ChP Ttr Cdh23.var1 - Zfp263 0.0000000 0.0000000 1
4931429P17Rik 0.5571429 1.3250066 2.2938416 0.0000000 ChP Ttr Cdh23.var1 - Zfp263 0.0000000 0.0000000 1
Atp1b2 0.4000000 1.3091890 2.7777728 0.0000000 ChP Ttr Cdh23.var1 - Zfp263 0.0000000 0.0000000 1
Onecut2 0.6571429 1.2870901 1.9235445 0.0000000 ChP Ttr Cdh23.var1 - Zfp263 0.0000000 0.0000000 1
Hyou1 0.2428571 1.2725839 3.6617043 0.0000000 ChP Ttr Cdh23.var1 - Zfp263 0.0000000 0.0000000 1
Efhd1 0.3000000 1.2603887 3.2301325 0.0000000 ChP Ttr Cdh23.var1 - Zfp263 0.0000000 0.0000000 1
Fmnl2 0.7285714 1.2388133 1.7022567 0.0000000 ChP Ttr Cdh23.var1 - Zfp263 0.0000000 0.0000000 1
Tor3a 0.6857143 1.2221622 1.7883690 0.0000000 ChP Ttr Cdh23.var1 - Zfp263 0.0000000 0.0000000 1
Gm28140 0.2714286 1.2211631 3.3167004 0.0000000 ChP Ttr Cdh23.var1 - Zfp263 0.0000000 0.0000000 1
Csgalnact1 0.2571429 1.1924479 3.3048383 0.0000000 ChP Ttr Cdh23.var1 - Zfp263 0.0000000 0.0000000 1
Cdk8 0.7571429 1.1900438 1.5665756 0.0000000 ChP Ttr Cdh23.var1 - Zfp263 0.0000000 0.0000000 1
Ccdc60 0.4857143 1.1789739 2.2530551 0.0000000 ChP Ttr Cdh23.var1 - Zfp263 0.0000000 0.0000000 1
Wwox 0.3857143 1.1767988 2.5589322 0.0000000 ChP Ttr Cdh23.var1 - Zfp263 0.0000000 0.0000000 1
Gfra2 0.2142857 1.1718195 3.7052597 0.0000000 ChP Ttr Cdh23.var1 - Zfp263 0.0000000 0.0000000 1
Ddx5 1.0000000 1.6494924 1.7037138 0.0000000 ChP Ttr Mt-rnr2 - Ddx5 0.0000000 0.0000000 0
Fez1 0.2258065 0.7382955 1.9542130 0.0006103 ChP Ttr Mt-rnr2 - Ddx5 0.0805619 0.0201405 0
Zfp292 0.1935484 0.7338848 2.1471940 0.0004327 ChP Ttr Mt-rnr2 - Ddx5 0.0571146 0.0190382 0
Sod1 0.2903226 0.7160261 1.6834665 0.0004011 ChP Ttr Mt-rnr2 - Ddx5 0.0529487 0.0190382 0
Fam204a 0.1290323 0.7127007 2.4797237 0.0013266 ChP Ttr Mt-rnr2 - Ddx5 0.1751145 0.0350229 0
Hspa13 0.1290323 0.7035031 2.3924931 0.0028636 ChP Ttr Mt-rnr2 - Ddx5 0.3779937 0.0629989 0
Sdhb 0.1290323 0.6010787 2.1157893 0.0080073 ChP Ttr Mt-rnr2 - Ddx5 1.0000000 0.1509951 0
Ptpra 0.1290323 0.5000832 1.7573987 0.0339907 ChP Ttr Mt-rnr2 - Ddx5 1.0000000 0.4985297 0
Ncam1.var1 0.1935484 0.4883081 1.4156952 0.0245255 ChP Ttr Mt-rnr2 - Ddx5 1.0000000 0.4046704 0
Tpr 0.1612903 0.4797327 1.5002710 0.0403164 ChP Ttr Mt-rnr2 - Ddx5 1.0000000 0.5321759 0
Hnrnpa2b1 1.0000000 1.6116910 1.6180820 0.0000000 ChP Ttr Mt-rnr2 - Hnrnpa2b1 0.0000000 0.0000000 0
Ube2g1 0.1142857 0.3638192 1.4562042 0.0185536 ChP Ttr Mt-rnr2 - Hnrnpa2b1 1.0000000 0.5566094 0
Trip12 0.1428571 0.3161587 1.1061255 0.0439147 ChP Ttr Mt-rnr2 - Hnrnpa2b1 1.0000000 0.6226515 0
Rpl22 0.2142857 0.2815056 0.7979088 0.0425661 ChP Ttr Mt-rnr2 - Hnrnpa2b1 1.0000000 0.6226515 0
Hnrnpu 1.0000000 1.9640060 2.0442615 0.0000000 ChP Ttr Mt-rnr2 - Hnrnpu 0.0000000 0.0000000 0
Hsbp1 0.1666667 0.5653926 1.8223346 0.0022000 ChP Ttr Mt-rnr2 - Hnrnpu 0.3960072 0.1980036 0
Fkbp4 0.1904762 0.4108967 1.2648392 0.0185561 ChP Ttr Mt-rnr2 - Hnrnpu 1.0000000 0.5900429 0
Susd4 0.1428571 0.4065697 1.4651665 0.0196681 ChP Ttr Mt-rnr2 - Hnrnpu 1.0000000 0.5900429 0
Malat1 0.7142857 0.3979870 0.4567594 0.0045282 ChP Ttr Mt-rnr2 - Hnrnpu 0.8150829 0.2716943 0
Rpl14 0.3333333 0.3926171 0.8512870 0.0119047 ChP Ttr Mt-rnr2 - Hnrnpu 1.0000000 0.5357099 0
Rps8 0.4285714 0.3433171 0.6367996 0.0299487 ChP Ttr Mt-rnr2 - Hnrnpu 1.0000000 0.6685775 0
Basp1 0.2857143 0.3256521 0.7790465 0.0391351 ChP Ttr Mt-rnr2 - Hnrnpu 1.0000000 0.6685775 0
mt-Rnr2 0.9761905 0.1146262 0.0184393 0.0246991 ChP Ttr Mt-rnr2 - Hnrnpu 1.0000000 0.6351185 0
Hsp90ab1 1.0000000 1.5657359 1.5801090 0.0000000 ChP Ttr Mt-rnr2 - Hsp90ab1 0.0000000 0.0000000 0
Uqcc1 0.1020408 0.7293080 2.9882053 0.0000457 ChP Ttr Mt-rnr2 - Hsp90ab1 0.0073098 0.0024366 0
Gm10721 0.1224490 0.6801239 2.7059924 0.0000060 ChP Ttr Mt-rnr2 - Hsp90ab1 0.0009596 0.0004798 0
Rprd2 0.1020408 0.5699154 2.3072582 0.0022126 ChP Ttr Mt-rnr2 - Hsp90ab1 0.3540109 0.0708022 0
Gm10719 0.1224490 0.5562695 2.2211300 0.0001978 ChP Ttr Mt-rnr2 - Hsp90ab1 0.0316503 0.0079126 0
Ndufa2 0.1020408 0.5150661 2.0618700 0.0089239 ChP Ttr Mt-rnr2 - Hsp90ab1 1.0000000 0.2039740 0
Chl1 0.1836735 0.4606762 1.4344724 0.0057406 ChP Ttr Mt-rnr2 - Hsp90ab1 0.9185026 0.1530838 0
Fscn1 0.1224490 0.4299420 1.5795929 0.0290917 ChP Ttr Mt-rnr2 - Hsp90ab1 1.0000000 0.3826870 0
Nop53 0.1428571 0.4149121 1.4168938 0.0270124 ChP Ttr Mt-rnr2 - Hsp90ab1 1.0000000 0.3826870 0
Zfp462 0.1632653 0.3970274 1.2573234 0.0327610 ChP Ttr Mt-rnr2 - Hsp90ab1 1.0000000 0.3826870 0
Gm10717 0.1224490 0.3941830 1.5726277 0.0103013 ChP Ttr Mt-rnr2 - Hsp90ab1 1.0000000 0.2060255 0
Prkd1 0.1428571 0.3833335 1.3145462 0.0388766 ChP Ttr Mt-rnr2 - Hsp90ab1 1.0000000 0.3826870 0
Gm10722 0.1632653 0.3549536 1.1985156 0.0226509 ChP Ttr Mt-rnr2 - Hsp90ab1 1.0000000 0.3826870 0
Grm5 0.1428571 0.3464327 1.2187287 0.0430523 ChP Ttr Mt-rnr2 - Hsp90ab1 1.0000000 0.3826870 0
Mtch1 0.1632653 0.3356862 1.0988692 0.0475618 ChP Ttr Mt-rnr2 - Hsp90ab1 1.0000000 0.4005202 0
Gm33838 0.1020408 0.3251483 1.4136107 0.0360305 ChP Ttr Mt-rnr2 - Hsp90ab1 1.0000000 0.3826870 0
mt-Rnr1 0.6734694 0.2813069 0.3271394 0.0411897 ChP Ttr Mt-rnr2 - Hsp90ab1 1.0000000 0.3826870 0
Eef1a1 0.4693878 0.2772833 0.4642789 0.0298439 ChP Ttr Mt-rnr2 - Hsp90ab1 1.0000000 0.3826870 0
mt-Rnr2 0.9795918 0.1016606 0.0163661 0.0335695 ChP Ttr Mt-rnr2 - Hsp90ab1 1.0000000 0.3826870 0
Marcks 1.0000000 1.9554770 2.0551093 0.0000000 ChP Ttr Mt-rnr2 - Marcks 0.0000000 0.0000000 0
Rpl5-ps1 0.2333333 0.8034002 2.1029045 0.0001829 ChP Ttr Mt-rnr2 - Marcks 0.0237742 0.0118871 0
Snx27 0.1333333 0.7064306 2.4057518 0.0024308 ChP Ttr Mt-rnr2 - Marcks 0.3160044 0.1053348 0
Gm9794 0.1333333 0.5417294 1.8731726 0.0210943 ChP Ttr Mt-rnr2 - Marcks 1.0000000 0.5377152 0
6030443J06Rik 0.1333333 0.5316282 1.8580316 0.0229887 ChP Ttr Mt-rnr2 - Marcks 1.0000000 0.5377152 0
Fam168b 0.1666667 0.4675575 1.4627596 0.0371061 ChP Ttr Mt-rnr2 - Marcks 1.0000000 0.5377152 0
Csrp2 0.1333333 0.4663210 1.6525800 0.0380941 ChP Ttr Mt-rnr2 - Marcks 1.0000000 0.5377152 0
Usp32 0.1666667 0.4443158 1.4114120 0.0475099 ChP Ttr Mt-rnr2 - Marcks 1.0000000 0.5377152 0
Basp1 0.3000000 0.3629462 0.8419628 0.0498744 ChP Ttr Mt-rnr2 - Marcks 1.0000000 0.5377152 0
Prkca.var1 1.0000000 1.1836550 1.0083914 0.0000000 ChP Ttr Mt-rnr2 - Prkca.var1 0.0000000 0.0000000 0
mt-Rnr2 1.0000000 0.2993773 0.0476257 0.0013167 ChP Ttr Mt-rnr2 - Prkca.var1 0.0948032 0.0474016 0
Afm 0.3191489 0.2360689 0.5303145 0.0072317 ChP Ttr Mt-rnr2 - Prkca.var1 0.5206835 0.1735612 0
A430110C17Rik 0.1250000 2.2346591 6.0927797 0.0000000 ChP Ttr Mt-rnr2 - Rps8 0.0000000 0.0000000 0
Rps8 1.0000000 1.8516052 1.9970850 0.0000000 ChP Ttr Mt-rnr2 - Rps8 0.0000000 0.0000000 0
Cep85 0.1250000 1.5082467 4.2654869 0.0000192 ChP Ttr Mt-rnr2 - Rps8 0.0060764 0.0009120 0
Atxn7l2 0.1250000 1.4352955 4.2616254 0.0000059 ChP Ttr Mt-rnr2 - Rps8 0.0018534 0.0004633 0
Bcl7b 0.1250000 1.4291104 4.1580010 0.0000192 ChP Ttr Mt-rnr2 - Rps8 0.0060764 0.0009120 0
Dtd1 0.1250000 1.4220367 4.4842841 0.0000002 ChP Ttr Mt-rnr2 - Rps8 0.0000616 0.0000205 0
Gm5141 0.1250000 1.3247099 4.0250758 0.0000202 ChP Ttr Mt-rnr2 - Rps8 0.0063841 0.0009120 0
Pdzrn4 0.1250000 1.3235089 3.8970703 0.0001306 ChP Ttr Mt-rnr2 - Rps8 0.0412678 0.0046800 0
Dnajc10 0.1250000 1.1632805 3.5637420 0.0005184 ChP Ttr Mt-rnr2 - Rps8 0.1638077 0.0100973 0
Prr14l 0.1250000 1.1373153 3.6381269 0.0001333 ChP Ttr Mt-rnr2 - Rps8 0.0421198 0.0046800 0
Tada2a 0.1250000 1.1168441 3.4354724 0.0008459 ChP Ttr Mt-rnr2 - Rps8 0.2673112 0.0133656 0
Numb 0.1250000 1.1166088 3.4776272 0.0005094 ChP Ttr Mt-rnr2 - Rps8 0.1609827 0.0100973 0
Macrod1 0.1250000 1.1134924 3.5437703 0.0002792 ChP Ttr Mt-rnr2 - Rps8 0.0882298 0.0088230 0
Ksr2 0.1250000 1.0959864 3.4640869 0.0005184 ChP Ttr Mt-rnr2 - Rps8 0.1638077 0.0100973 0
4930503L19Rik 0.1250000 1.0836254 3.2819183 0.0020758 ChP Ttr Mt-rnr2 - Rps8 0.6559589 0.0298163 0
Nrxn1.var1 0.1250000 1.0628516 3.4187458 0.0005367 ChP Ttr Mt-rnr2 - Rps8 0.1695970 0.0100973 0
Tfe3 0.1250000 1.0251131 3.3554050 0.0005367 ChP Ttr Mt-rnr2 - Rps8 0.1695970 0.0100973 0
Brwd3 0.1250000 1.0172589 3.2841473 0.0008391 ChP Ttr Mt-rnr2 - Rps8 0.2651486 0.0133656 0
Rpap3 0.1250000 1.0104382 3.3401655 0.0005752 ChP Ttr Mt-rnr2 - Rps8 0.1817517 0.0100973 0
Sos2 0.1250000 1.0095445 3.0505963 0.0075025 ChP Ttr Mt-rnr2 - Rps8 1.0000000 0.0685584 0
Atf6 0.1250000 1.0048191 3.3212853 0.0005367 ChP Ttr Mt-rnr2 - Rps8 0.1695970 0.0100973 0
Ubr3 0.1250000 0.9870822 3.1315670 0.0031902 ChP Ttr Mt-rnr2 - Rps8 1.0000000 0.0414144 0
Isy1 0.1250000 0.9798666 3.1162372 0.0032765 ChP Ttr Mt-rnr2 - Rps8 1.0000000 0.0414144 0
Carmil3 0.1250000 0.9548891 3.0128516 0.0059626 ChP Ttr Mt-rnr2 - Rps8 1.0000000 0.0607796 0
Qars 0.1250000 0.9492845 3.0995032 0.0021973 ChP Ttr Mt-rnr2 - Rps8 0.6943326 0.0301884 0
Sox11 1.0000000 1.7478122 1.8088037 0.0000000 ChP Ttr Mt-rnr2 - Sox11 0.0000000 0.0000000 0
Tab2 0.1136364 0.5616806 2.1275035 0.0051530 ChP Ttr Mt-rnr2 - Sox11 0.7368813 0.3684407 0
Soga3 0.1136364 0.5250039 2.0006905 0.0083627 ChP Ttr Mt-rnr2 - Sox11 1.0000000 0.3986205 0
R3hdm4 0.1136364 0.4340385 1.6607584 0.0291787 ChP Ttr Mt-rnr2 - Sox11 1.0000000 0.8905007 0
Pax6 0.1136364 0.3662756 1.4439506 0.0479716 ChP Ttr Mt-rnr2 - Sox11 1.0000000 0.8905007 0
Ddah2 0.1818182 0.3645124 1.1143012 0.0437128 ChP Ttr Mt-rnr2 - Sox11 1.0000000 0.8905007 0
Gm10718 0.1363636 0.3212671 1.1952604 0.0486975 ChP Ttr Mt-rnr2 - Sox11 1.0000000 0.8905007 0
Tubb2b 1.0000000 1.6767973 1.7121734 0.0000000 ChP Ttr Mt-rnr2 - Tubb2b 0.0000000 0.0000000 0
Gapdh 0.2127660 0.4802010 1.3597809 0.0046470 ChP Ttr Mt-rnr2 - Tubb2b 0.5018793 0.1867228 0
Tcf25 0.1063830 0.4460994 1.7916651 0.0163104 ChP Ttr Mt-rnr2 - Tubb2b 1.0000000 0.4403800 0
mt-Nd1 0.4255319 0.4081107 0.7631463 0.0051867 ChP Ttr Mt-rnr2 - Tubb2b 0.5601685 0.1867228 0
Rab11b 0.1063830 0.3699769 1.5173556 0.0421889 ChP Ttr Mt-rnr2 - Tubb2b 1.0000000 0.6992553 0
Gm35769 0.2127660 0.3424825 0.9589081 0.0383605 ChP Ttr Mt-rnr2 - Tubb2b 1.0000000 0.6992553 0
Zfp263 1.0000000 1.7327974 1.8188693 0.0000000 ChP Ttr Mt-rnr2 - Zfp263 0.0000000 0.0000000 0
Trpc4 0.4054054 0.7669705 1.4899984 0.0000127 ChP Ttr Mt-rnr2 - Zfp263 0.0023672 0.0011836 0
3110039M20Rik 0.1081081 0.7633100 2.9003846 0.0002552 ChP Ttr Mt-rnr2 - Zfp263 0.0474721 0.0118680 0
Scmh1 0.1621622 0.7180919 2.3040335 0.0002045 ChP Ttr Mt-rnr2 - Zfp263 0.0380329 0.0118680 0
Kctd20 0.1081081 0.5872675 2.2453012 0.0074241 ChP Ttr Mt-rnr2 - Zfp263 1.0000000 0.2301479 0
Maml3.var1 0.1351351 0.5292577 1.9307525 0.0050175 ChP Ttr Mt-rnr2 - Zfp263 0.9332492 0.1866498 0
Shb 0.1351351 0.4865611 1.7158225 0.0172784 ChP Ttr Mt-rnr2 - Zfp263 1.0000000 0.3570863 0
Ubl5 0.1351351 0.4684930 1.6380980 0.0250987 ChP Ttr Mt-rnr2 - Zfp263 1.0000000 0.3764895 0
Elof1 0.1081081 0.4645684 1.7798580 0.0381796 ChP Ttr Mt-rnr2 - Zfp263 1.0000000 0.5072428 0
Hmg20b 0.1081081 0.4602133 1.8548258 0.0196186 ChP Ttr Mt-rnr2 - Zfp263 1.0000000 0.3649052 0
Ftl1-ps1 0.1081081 0.4492879 1.8099674 0.0239883 ChP Ttr Mt-rnr2 - Zfp263 1.0000000 0.3764895 0
Pcgf5 0.2432432 0.4405886 1.1587344 0.0167600 ChP Ttr Mt-rnr2 - Zfp263 1.0000000 0.3570863 0
Snd1 0.1351351 0.4227835 1.5397792 0.0263138 ChP Ttr Mt-rnr2 - Zfp263 1.0000000 0.3764895 0
Ftl1 0.1621622 0.4061542 1.3264106 0.0419820 ChP Ttr Mt-rnr2 - Zfp263 1.0000000 0.5205773 0
mt-Rnr2 1.0000000 0.3436762 0.0545345 0.0161331 ChP Ttr Mt-rnr2 - Zfp263 1.0000000 0.3570863 0
Ptma 0.5405405 0.2100022 0.2973201 0.0470692 ChP Ttr Mt-rnr2 - Zfp263 1.0000000 0.5471796 0
Cdk8 1.0000000 1.7172259 1.8621585 0.0000000 CTX Foxg1 Mt-rnr2 - Cdk8 0.0000000 0.0000000 0
Npsr1 0.1500000 1.3386896 4.0333546 0.0000000 CTX Foxg1 Mt-rnr2 - Cdk8 0.0000068 0.0000034 0
Itpr1 0.2500000 1.3225489 3.0862560 0.0000011 CTX Foxg1 Mt-rnr2 - Cdk8 0.0001831 0.0000610 0
St8sia1 0.1500000 1.1424609 3.4744266 0.0000105 CTX Foxg1 Mt-rnr2 - Cdk8 0.0017677 0.0004419 0
Zfp36l1 0.2000000 1.0970021 2.9688845 0.0000171 CTX Foxg1 Mt-rnr2 - Cdk8 0.0028798 0.0005760 0
Tdrd3 0.1500000 0.9191469 2.8288170 0.0010131 CTX Foxg1 Mt-rnr2 - Cdk8 0.1701947 0.0243135 0
Cul4a 0.1500000 0.8609861 2.7022191 0.0014722 CTX Foxg1 Mt-rnr2 - Cdk8 0.2473292 0.0309161 0
Greb1 0.1500000 0.8213455 2.7138692 0.0006052 CTX Foxg1 Mt-rnr2 - Cdk8 0.1016666 0.0169444 0
Klhdc2 0.2000000 0.8150848 2.2429014 0.0025197 CTX Foxg1 Mt-rnr2 - Cdk8 0.4233041 0.0423304 0
Ska2 0.2000000 0.8116308 2.2125797 0.0033795 CTX Foxg1 Mt-rnr2 - Cdk8 0.5677596 0.0502013 0
Wnk1 0.2000000 0.7877579 2.1792194 0.0035858 CTX Foxg1 Mt-rnr2 - Cdk8 0.6024152 0.0502013 0
Chl1 0.2500000 0.7408094 1.8669674 0.0042729 CTX Foxg1 Mt-rnr2 - Cdk8 0.7178529 0.0552195 0
Csmd2 0.1500000 0.7366837 2.4689784 0.0024220 CTX Foxg1 Mt-rnr2 - Cdk8 0.4069002 0.0423304 0
Foxp2 0.1500000 0.7000465 2.3013782 0.0068370 CTX Foxg1 Mt-rnr2 - Cdk8 1.0000000 0.0765739 0
Cox7b 0.2000000 0.6777076 1.8441165 0.0171382 CTX Foxg1 Mt-rnr2 - Cdk8 1.0000000 0.1606465 0
Ldha 0.3500000 0.6490904 1.3610374 0.0064538 CTX Foxg1 Mt-rnr2 - Cdk8 1.0000000 0.0765739 0
Clasp2 0.1500000 0.6303926 1.9986591 0.0287411 CTX Foxg1 Mt-rnr2 - Cdk8 1.0000000 0.2242840 0
Rtca 0.1500000 0.6225496 2.0497361 0.0193433 CTX Foxg1 Mt-rnr2 - Cdk8 1.0000000 0.1679706 0
Pld5.var1 0.2000000 0.6208825 1.7586809 0.0172121 CTX Foxg1 Mt-rnr2 - Cdk8 1.0000000 0.1606465 0
Sars 0.2000000 0.6172240 1.7437690 0.0199965 CTX Foxg1 Mt-rnr2 - Cdk8 1.0000000 0.1679706 0
Zfp428 0.1500000 0.5964061 1.9046837 0.0367237 CTX Foxg1 Mt-rnr2 - Cdk8 1.0000000 0.2601113 0
Eif1b 0.2000000 0.5925181 1.6456970 0.0293705 CTX Foxg1 Mt-rnr2 - Cdk8 1.0000000 0.2242840 0
Chchd6.var1 0.1500000 0.5777144 1.8708143 0.0371588 CTX Foxg1 Mt-rnr2 - Cdk8 1.0000000 0.2601113 0
Mtch2 0.1500000 0.5339491 1.7752599 0.0452300 CTX Foxg1 Mt-rnr2 - Cdk8 1.0000000 0.2814309 0
Sec61a1 0.2500000 0.5065410 1.2762902 0.0440741 CTX Foxg1 Mt-rnr2 - Cdk8 1.0000000 0.2814309 0
Rpl4 1.0000000 1.7115555 1.7677046 0.0000000 CTX Foxg1 Mt-rnr2 - Rpl4 0.0000000 0.0000000 0
Gm5835 0.3000000 1.1938662 2.7145001 0.0000000 CTX Foxg1 Mt-rnr2 - Rpl4 0.0000000 0.0000000 0
Gtf2f1 0.1500000 0.6479434 2.1394179 0.0011454 CTX Foxg1 Mt-rnr2 - Rpl4 0.1534821 0.0511607 0
Nras 0.1750000 0.6087596 1.8672585 0.0018850 CTX Foxg1 Mt-rnr2 - Rpl4 0.2525861 0.0631465 0
Rab1a 0.1750000 0.4621674 1.4272804 0.0167825 CTX Foxg1 Mt-rnr2 - Rpl4 1.0000000 0.4497702 0
Oip5os1 0.1250000 0.4439893 1.6612015 0.0203368 CTX Foxg1 Mt-rnr2 - Rpl4 1.0000000 0.4541889 0
Luc7l3 0.2250000 0.3975260 1.0715411 0.0290353 CTX Foxg1 Mt-rnr2 - Rpl4 1.0000000 0.4863417 0
Actg1 0.3000000 0.3684743 0.8384187 0.0274516 CTX Foxg1 Mt-rnr2 - Rpl4 1.0000000 0.4863417 0
Pabpn1 0.5714286 2.4274975 4.4158570 0.0000000 CTX Foxg1 Psip1 - Hmgb1 0.0000000 0.0000000 2
Prpf38b 0.6428571 2.4116764 4.0663818 0.0000000 CTX Foxg1 Psip1 - Hmgb1 0.0000000 0.0000000 2
Miat 0.5178571 2.3494317 4.5742689 0.0000000 CTX Foxg1 Psip1 - Hmgb1 0.0000000 0.0000000 2
Uso1 0.6071429 2.3106446 4.1271856 0.0000000 CTX Foxg1 Psip1 - Hmgb1 0.0000000 0.0000000 2
Wsb1 0.6785714 2.2873246 3.7863499 0.0000000 CTX Foxg1 Psip1 - Hmgb1 0.0000000 0.0000000 2
Msmo1 0.3750000 2.2701189 5.5399828 0.0000000 CTX Foxg1 Psip1 - Hmgb1 0.0000000 0.0000000 2
Macir 0.4285714 2.2536356 5.0045485 0.0000000 CTX Foxg1 Psip1 - Hmgb1 0.0000000 0.0000000 2
Zfp451 0.4285714 2.2198149 4.9642267 0.0000000 CTX Foxg1 Psip1 - Hmgb1 0.0000000 0.0000000 2
Ppp3cb 0.6250000 2.2145206 3.8473863 0.0000000 CTX Foxg1 Psip1 - Hmgb1 0.0000000 0.0000000 2
Ip6k2 0.5000000 2.2054697 4.4088866 0.0000000 CTX Foxg1 Psip1 - Hmgb1 0.0000000 0.0000000 2
Ttyh3 0.3214286 2.2047749 6.1330723 0.0000000 CTX Foxg1 Psip1 - Hmgb1 0.0000000 0.0000000 2
Casc3 0.4107143 2.1977326 4.9764381 0.0000000 CTX Foxg1 Psip1 - Hmgb1 0.0000000 0.0000000 2
Gm47283 0.7678571 2.1958950 3.3554335 0.0000000 CTX Foxg1 Psip1 - Hmgb1 0.0000000 0.0000000 2
Csnk2a1 0.5357143 2.1818521 4.2035474 0.0000000 CTX Foxg1 Psip1 - Hmgb1 0.0000000 0.0000000 2
Rnd2 0.7321429 2.1804110 3.4225694 0.0000000 CTX Foxg1 Psip1 - Hmgb1 0.0000000 0.0000000 2
Lrrc58 0.5535714 2.1801188 4.1440664 0.0000000 CTX Foxg1 Psip1 - Hmgb1 0.0000000 0.0000000 2
Rnf20 0.4821429 2.1740260 4.4644082 0.0000000 CTX Foxg1 Psip1 - Hmgb1 0.0000000 0.0000000 2
Ccp110 0.4642857 2.1621004 4.6034351 0.0000000 CTX Foxg1 Psip1 - Hmgb1 0.0000000 0.0000000 2
Ndufb8 0.5892857 2.1499856 3.9431208 0.0000000 CTX Foxg1 Psip1 - Hmgb1 0.0000000 0.0000000 2
Fubp3 0.4464286 2.1428032 4.5559981 0.0000000 CTX Foxg1 Psip1 - Hmgb1 0.0000000 0.0000000 2
Zfand5 0.6428571 2.1398923 3.7293755 0.0000000 CTX Foxg1 Psip1 - Hmgb1 0.0000000 0.0000000 2
Actr2 0.5714286 2.1334758 4.0145910 0.0000000 CTX Foxg1 Psip1 - Hmgb1 0.0000000 0.0000000 2
Vbp1 0.5535714 2.1318144 4.0669238 0.0000000 CTX Foxg1 Psip1 - Hmgb1 0.0000000 0.0000000 2
Smarcd1 0.4464286 2.1302806 4.6582456 0.0000000 CTX Foxg1 Psip1 - Hmgb1 0.0000000 0.0000000 2
Egln1 0.4464286 2.1277803 4.5972317 0.0000000 CTX Foxg1 Psip1 - Hmgb1 0.0000000 0.0000000 2
Rpl7 1.0000000 1.8401280 1.9209030 0.0000000 CTX Tbr1 Mt-rnr2 - Rpl7 0.0000000 0.0000000 0
Gm12174 0.2500000 1.7236278 3.8002833 0.0000000 CTX Tbr1 Mt-rnr2 - Rpl7 0.0000001 0.0000000 0
Rpl7-ps7 0.2500000 1.1220233 2.6137408 0.0000888 CTX Tbr1 Mt-rnr2 - Rpl7 0.0113689 0.0037896 0
Ash1l 0.2000000 0.8648275 2.3363151 0.0019660 CTX Tbr1 Mt-rnr2 - Rpl7 0.2516423 0.0629106 0
Tubb2a 0.1500000 0.7362437 2.3120409 0.0087861 CTX Tbr1 Mt-rnr2 - Rpl7 1.0000000 0.2249229 0
Aplp1 0.1500000 0.7071680 2.2115261 0.0142958 CTX Tbr1 Mt-rnr2 - Rpl7 1.0000000 0.2287329 0
Ptk2 0.1500000 0.6769490 2.1182113 0.0218092 CTX Tbr1 Mt-rnr2 - Rpl7 1.0000000 0.2602939 0
Chd9 0.1500000 0.6319945 1.9740446 0.0337979 CTX Tbr1 Mt-rnr2 - Rpl7 1.0000000 0.3060608 0
Ppp4r3b 0.1500000 0.6109500 1.9471829 0.0319920 CTX Tbr1 Mt-rnr2 - Rpl7 1.0000000 0.3060608 0
Fbxl7.var1 0.1500000 0.6097247 1.9707464 0.0244026 CTX Tbr1 Mt-rnr2 - Rpl7 1.0000000 0.2602939 0
Antxr1 0.1500000 0.6035193 1.8825123 0.0449741 CTX Tbr1 Mt-rnr2 - Rpl7 1.0000000 0.3198155 0
Otub1 0.1500000 0.5806242 1.8736065 0.0358665 CTX Tbr1 Mt-rnr2 - Rpl7 1.0000000 0.3060608 0
Usp14 0.1500000 0.5763822 1.8731880 0.0384905 CTX Tbr1 Mt-rnr2 - Rpl7 1.0000000 0.3079236 0
Ptges3 0.2500000 0.5741122 1.4429680 0.0232935 CTX Tbr1 Mt-rnr2 - Rpl7 1.0000000 0.2602939 0
Tubb3 0.3500000 0.5656200 1.1827242 0.0166489 CTX Tbr1 Mt-rnr2 - Rpl7 1.0000000 0.2367837 0
Gm49497 0.4500000 0.5534447 0.9965262 0.0111127 CTX Tbr1 Mt-rnr2 - Rpl7 1.0000000 0.2287329 0
Aldoc 0.2000000 0.5464606 1.5386656 0.0448924 CTX Tbr1 Mt-rnr2 - Rpl7 1.0000000 0.3198155 0
Tpt1 0.6000000 0.4872177 0.6904770 0.0129339 CTX Tbr1 Mt-rnr2 - Rpl7 1.0000000 0.2287329 0
Fhad1 0.1481481 2.1828834 7.0528355 0.0000000 HIP Lhx2 Cdh23.var1 - Akap8 0.0000000 0.0000000 1
Tmprss5 0.6296296 1.8686596 2.7952656 0.0000000 HIP Lhx2 Cdh23.var1 - Akap8 0.0000000 0.0000000 1
Lrmp 0.1481481 1.8049285 5.4709037 0.0000000 HIP Lhx2 Cdh23.var1 - Akap8 0.0000000 0.0000000 1
Usp54 0.7037037 1.7924190 2.4793276 0.0000000 HIP Lhx2 Cdh23.var1 - Akap8 0.0000000 0.0000000 1
Slc4a10.var1 0.2962963 1.7628027 3.8796193 0.0000000 HIP Lhx2 Cdh23.var1 - Akap8 0.0000000 0.0000000 1
Akap8 1.0000000 1.7541721 1.8760415 0.0000000 HIP Lhx2 Cdh23.var1 - Akap8 0.0000000 0.0000000 1
Rnf19a 0.4814815 1.7245207 2.8979208 0.0000000 HIP Lhx2 Cdh23.var1 - Akap8 0.0000000 0.0000000 1
Arhgap18 0.4814815 1.7028794 2.9753301 0.0000000 HIP Lhx2 Cdh23.var1 - Akap8 0.0000000 0.0000000 1
Gm41556 0.4444444 1.7001928 3.1955031 0.0000000 HIP Lhx2 Cdh23.var1 - Akap8 0.0000000 0.0000000 1
Marchf1 0.7407407 1.6942169 2.3406457 0.0000000 HIP Lhx2 Cdh23.var1 - Akap8 0.0000000 0.0000000 1
Rtkn 0.3333333 1.6792680 3.5223180 0.0000000 HIP Lhx2 Cdh23.var1 - Akap8 0.0000000 0.0000000 1
Gm9614 0.1481481 1.6622318 5.0560522 0.0000000 HIP Lhx2 Cdh23.var1 - Akap8 0.0000000 0.0000000 1
Stox1 0.4444444 1.6136123 2.9863757 0.0000000 HIP Lhx2 Cdh23.var1 - Akap8 0.0000000 0.0000000 1
Susd1 0.1111111 1.5940160 6.0115148 0.0000000 HIP Lhx2 Cdh23.var1 - Akap8 0.0000000 0.0000000 1
1700030N03Rik 0.1481481 1.5519507 4.7569289 0.0000000 HIP Lhx2 Cdh23.var1 - Akap8 0.0000000 0.0000000 1
Dmtn 0.4074074 1.5463076 3.0657511 0.0000000 HIP Lhx2 Cdh23.var1 - Akap8 0.0000000 0.0000000 1
Kif24 0.2222222 1.5191287 3.8896399 0.0000000 HIP Lhx2 Cdh23.var1 - Akap8 0.0000000 0.0000000 1
Olfr1109 0.5925926 1.5100610 2.4075748 0.0000000 HIP Lhx2 Cdh23.var1 - Akap8 0.0000000 0.0000000 1
Dpp10.var1 0.4074074 1.4493015 2.8447692 0.0000000 HIP Lhx2 Cdh23.var1 - Akap8 0.0000000 0.0000000 1
Dtnb 0.7037037 1.4272749 2.0496973 0.0000000 HIP Lhx2 Cdh23.var1 - Akap8 0.0000000 0.0000000 1
Gm32067 0.6666667 1.4183130 2.0642088 0.0000000 HIP Lhx2 Cdh23.var1 - Akap8 0.0000000 0.0000000 1
Syne1.var1 0.1111111 1.4075518 4.8531973 0.0000000 HIP Lhx2 Cdh23.var1 - Akap8 0.0000012 0.0000000 1
Frmpd4 0.4074074 1.3868851 2.7929180 0.0000000 HIP Lhx2 Cdh23.var1 - Akap8 0.0000000 0.0000000 1
9630028H03Rik.var1 0.1111111 1.3854393 4.7998084 0.0000000 HIP Lhx2 Cdh23.var1 - Akap8 0.0000013 0.0000000 1
Pvr 0.5555556 1.3835816 2.3164684 0.0000000 HIP Lhx2 Cdh23.var1 - Akap8 0.0000000 0.0000000 1
Grm8.var1 1.0000000 1.8976975 2.0161904 0.0000000 HIP Lhx2 Mt-rnr2 - Grm8.var1 0.0000000 0.0000000 0
Odad4 0.1052632 1.5344738 4.8911618 0.0000002 HIP Lhx2 Mt-rnr2 - Grm8.var1 0.0000712 0.0000237 0
Mapk4 0.1052632 1.4286132 4.7178671 0.0000002 HIP Lhx2 Mt-rnr2 - Grm8.var1 0.0000712 0.0000237 0
Gm19784 0.1052632 1.2737315 4.2110808 0.0000109 HIP Lhx2 Mt-rnr2 - Grm8.var1 0.0035715 0.0007332 0
Arf6 0.1052632 1.2580715 4.2073040 0.0000112 HIP Lhx2 Mt-rnr2 - Grm8.var1 0.0036658 0.0007332 0
Glod4 0.1578947 1.1394362 3.2176163 0.0001922 HIP Lhx2 Mt-rnr2 - Grm8.var1 0.0630481 0.0078810 0
Rhpn2 0.1052632 1.0659683 3.8108938 0.0000445 HIP Lhx2 Mt-rnr2 - Grm8.var1 0.0145885 0.0022842 0
Atg4a 0.1052632 1.0258072 3.7647861 0.0000487 HIP Lhx2 Mt-rnr2 - Grm8.var1 0.0159893 0.0022842 0
Ypel3 0.1052632 1.0209789 3.5832604 0.0002890 HIP Lhx2 Mt-rnr2 - Grm8.var1 0.0947806 0.0105312 0
Fam189a1 0.1578947 1.0013943 2.8975094 0.0008187 HIP Lhx2 Mt-rnr2 - Grm8.var1 0.2685308 0.0268531 0
2610005L07Rik 0.1052632 0.9227340 3.2523775 0.0019293 HIP Lhx2 Mt-rnr2 - Grm8.var1 0.6328106 0.0421874 0
Acp2 0.1052632 0.9039430 3.2048735 0.0019015 HIP Lhx2 Mt-rnr2 - Grm8.var1 0.6236995 0.0421874 0
Mindy2 0.1052632 0.8832556 3.2307917 0.0011746 HIP Lhx2 Mt-rnr2 - Grm8.var1 0.3852545 0.0350231 0
Bivm 0.1052632 0.8701965 3.0484579 0.0045147 HIP Lhx2 Mt-rnr2 - Grm8.var1 1.0000000 0.0843650 0
Tox3 0.1578947 0.8586726 2.6412333 0.0017628 HIP Lhx2 Mt-rnr2 - Grm8.var1 0.5782099 0.0421874 0
Klhdc3 0.1052632 0.8576288 3.0349519 0.0046298 HIP Lhx2 Mt-rnr2 - Grm8.var1 1.0000000 0.0843650 0
Gabrb3 0.1052632 0.8133855 2.9585075 0.0044582 HIP Lhx2 Mt-rnr2 - Grm8.var1 1.0000000 0.0843650 0
Gm30835 0.1052632 0.8025005 2.8919100 0.0062352 HIP Lhx2 Mt-rnr2 - Grm8.var1 1.0000000 0.0993663 0
Rnf2 0.1052632 0.7737369 2.6952495 0.0189191 HIP Lhx2 Mt-rnr2 - Grm8.var1 1.0000000 0.1641484 0
Ebna1bp2 0.1578947 0.7622719 2.3540529 0.0063619 HIP Lhx2 Mt-rnr2 - Grm8.var1 1.0000000 0.0993663 0
C2cd3 0.1052632 0.7607475 2.8687270 0.0049911 HIP Lhx2 Mt-rnr2 - Grm8.var1 1.0000000 0.0861625 0
Ifrd1 0.1052632 0.7524529 2.6711435 0.0196457 HIP Lhx2 Mt-rnr2 - Grm8.var1 1.0000000 0.1641484 0
Dbnl 0.1052632 0.7433581 2.6855538 0.0158364 HIP Lhx2 Mt-rnr2 - Grm8.var1 1.0000000 0.1623230 0
Incenp 0.1578947 0.7382366 2.3121090 0.0066919 HIP Lhx2 Mt-rnr2 - Grm8.var1 1.0000000 0.0997699 0
Smndc1 0.1052632 0.7367872 2.7055941 0.0121082 HIP Lhx2 Mt-rnr2 - Grm8.var1 1.0000000 0.1383873 0
Rps14 1.0000000 1.8132322 1.9028644 0.0000000 HIP Lhx2 Mt-rnr2 - Rps14 0.0000000 0.0000000 0
Gm5805 0.2727273 1.2427590 2.8028784 0.0000020 HIP Lhx2 Mt-rnr2 - Rps14 0.0003504 0.0001752 0
Rhot1 0.1363636 0.8856726 2.8224309 0.0015996 HIP Lhx2 Mt-rnr2 - Rps14 0.2847255 0.0711814 0
Cnot1 0.1818182 0.8161969 2.3382528 0.0022775 HIP Lhx2 Mt-rnr2 - Rps14 0.4053871 0.0713503 0
A830082K12Rik 0.1363636 0.8111985 2.5628675 0.0058698 HIP Lhx2 Mt-rnr2 - Rps14 1.0000000 0.0949845 0
Vps36 0.1363636 0.7876273 2.5232946 0.0057208 HIP Lhx2 Mt-rnr2 - Rps14 1.0000000 0.0949845 0
Rbpj 0.2272727 0.7655947 1.9877839 0.0029009 HIP Lhx2 Mt-rnr2 - Rps14 0.5163663 0.0713503 0
Pfkm 0.1363636 0.7589875 2.5449285 0.0032068 HIP Lhx2 Mt-rnr2 - Rps14 0.5708025 0.0713503 0
Vim 0.4545455 0.7546520 1.3703201 0.0005633 HIP Lhx2 Mt-rnr2 - Rps14 0.1002655 0.0334218 0
Ankrd13a 0.1363636 0.7537200 2.4216621 0.0091765 HIP Lhx2 Mt-rnr2 - Rps14 1.0000000 0.1361184 0
Tbl1x 0.1363636 0.7511910 2.4883333 0.0051002 HIP Lhx2 Mt-rnr2 - Rps14 0.9078402 0.0949845 0
Mpdz 0.1363636 0.7444406 2.5193985 0.0031460 HIP Lhx2 Mt-rnr2 - Rps14 0.5599940 0.0713503 0
Slc39a6 0.1818182 0.6825486 1.9547477 0.0128535 HIP Lhx2 Mt-rnr2 - Rps14 1.0000000 0.1634234 0
Ythdc1 0.1818182 0.6699407 1.9238054 0.0148109 HIP Lhx2 Mt-rnr2 - Rps14 1.0000000 0.1757558 0
Tug1 0.1363636 0.6457717 2.1274457 0.0207447 HIP Lhx2 Mt-rnr2 - Rps14 1.0000000 0.2001481 0
Rpl18a-ps1 0.1363636 0.6428425 2.1454506 0.0195410 HIP Lhx2 Mt-rnr2 - Rps14 1.0000000 0.2001481 0
Pak2 0.1363636 0.6405591 2.0903663 0.0269812 HIP Lhx2 Mt-rnr2 - Rps14 1.0000000 0.2183027 0
Zcrb1 0.1363636 0.6365726 2.0939913 0.0234329 HIP Lhx2 Mt-rnr2 - Rps14 1.0000000 0.2001481 0
Foxp2 0.1363636 0.6034561 2.1291739 0.0128307 HIP Lhx2 Mt-rnr2 - Rps14 1.0000000 0.1634234 0
Ppig 0.2272727 0.6021895 1.5997062 0.0159133 HIP Lhx2 Mt-rnr2 - Rps14 1.0000000 0.1770350 0
Eif3l 0.1363636 0.5933434 2.0352120 0.0236130 HIP Lhx2 Mt-rnr2 - Rps14 1.0000000 0.2001481 0
Nudcd2 0.1363636 0.5835116 1.9781112 0.0298236 HIP Lhx2 Mt-rnr2 - Rps14 1.0000000 0.2225708 0
Tial1 0.1363636 0.5828475 1.9215695 0.0459036 HIP Lhx2 Mt-rnr2 - Rps14 1.0000000 0.2970808 0
Birc5 0.1363636 0.5756570 1.9659477 0.0300095 HIP Lhx2 Mt-rnr2 - Rps14 1.0000000 0.2225708 0
Nf2 0.1363636 0.5658253 1.9315106 0.0346118 HIP Lhx2 Mt-rnr2 - Rps14 1.0000000 0.2464359 0
Rps3 1.0000000 1.8824697 2.0150518 0.0000000 HIP Lhx2 Mt-rnr2 - Rps3 0.0000000 0.0000000 0
Chrac1 0.1428571 1.4454996 4.3003027 0.0000000 HIP Lhx2 Mt-rnr2 - Rps3 0.0000030 0.0000015 0
Eif2ak4 0.1428571 1.0470626 3.2205002 0.0001288 HIP Lhx2 Mt-rnr2 - Rps3 0.0251241 0.0083747 0
Zc3h18 0.1428571 1.0347949 3.0957025 0.0004615 HIP Lhx2 Mt-rnr2 - Rps3 0.0899936 0.0224984 0
Mcm6 0.1428571 0.8767200 2.7835373 0.0010434 HIP Lhx2 Mt-rnr2 - Rps3 0.2034710 0.0358478 0
Itch 0.1428571 0.8565299 2.7612107 0.0011030 HIP Lhx2 Mt-rnr2 - Rps3 0.2150867 0.0358478 0
Crip2 0.1428571 0.8372898 2.6735990 0.0021909 HIP Lhx2 Mt-rnr2 - Rps3 0.4272272 0.0523320 0
Pum1 0.1904762 0.8308737 2.3001018 0.0024153 HIP Lhx2 Mt-rnr2 - Rps3 0.4709883 0.0523320 0
Eps15 0.1428571 0.8251758 2.6463012 0.0020828 HIP Lhx2 Mt-rnr2 - Rps3 0.4061553 0.0523320 0
Sgta 0.1428571 0.7660464 2.4595583 0.0056865 HIP Lhx2 Mt-rnr2 - Rps3 1.0000000 0.1008060 0
Rab21 0.1428571 0.7560300 2.4823820 0.0038220 HIP Lhx2 Mt-rnr2 - Rps3 0.7452841 0.0745284 0
Ehbp1.var1 0.1904762 0.7186284 1.9974892 0.0101207 HIP Lhx2 Mt-rnr2 - Rps3 1.0000000 0.1315696 0
Gigyf2 0.1428571 0.6659263 2.2516823 0.0079870 HIP Lhx2 Mt-rnr2 - Rps3 1.0000000 0.1269854 0
Efna5 0.1428571 0.6594552 2.1284225 0.0188977 HIP Lhx2 Mt-rnr2 - Rps3 1.0000000 0.1502382 0
Cbx3 0.1904762 0.6565080 1.8954250 0.0120414 HIP Lhx2 Mt-rnr2 - Rps3 1.0000000 0.1448470 0
Fyb2 0.1428571 0.6468703 2.1280785 0.0172617 HIP Lhx2 Mt-rnr2 - Rps3 1.0000000 0.1502382 0
Hbb-bt 0.1904762 0.6398018 1.8258643 0.0179929 HIP Lhx2 Mt-rnr2 - Rps3 1.0000000 0.1502382 0
Son 0.2380952 0.6277650 1.6169100 0.0143695 HIP Lhx2 Mt-rnr2 - Rps3 1.0000000 0.1502382 0
Neurog2 0.1904762 0.6264609 1.7993472 0.0171588 HIP Lhx2 Mt-rnr2 - Rps3 1.0000000 0.1502382 0
Immt 0.1428571 0.6228134 2.0827773 0.0182540 HIP Lhx2 Mt-rnr2 - Rps3 1.0000000 0.1502382 0
Kat6b 0.1904762 0.6227674 1.7839525 0.0194487 HIP Lhx2 Mt-rnr2 - Rps3 1.0000000 0.1502382 0
Pten 0.1428571 0.6099940 1.9701994 0.0361878 HIP Lhx2 Mt-rnr2 - Rps3 1.0000000 0.2205196 0
Ptpn11 0.1428571 0.6035076 2.0438757 0.0195644 HIP Lhx2 Mt-rnr2 - Rps3 1.0000000 0.1502382 0
Ppm1g 0.1428571 0.5908515 1.9423855 0.0328840 HIP Lhx2 Mt-rnr2 - Rps3 1.0000000 0.2152901 0
Ank2.var1 0.1428571 0.5869961 1.9211700 0.0361878 HIP Lhx2 Mt-rnr2 - Rps3 1.0000000 0.2205196 0
Ywhae 1.0000000 1.9591196 2.0438046 0.0000000 HIP Lhx2 Mt-rnr2 - Ywhae 0.0000000 0.0000000 0
Dnmt3c 0.1034483 1.2196974 4.5605114 0.0000000 HIP Lhx2 Mt-rnr2 - Ywhae 0.0000025 0.0000013 0
Ctsd 0.1034483 0.8767115 3.3954863 0.0000325 HIP Lhx2 Mt-rnr2 - Ywhae 0.0105573 0.0035191 0
Cnpy3 0.1034483 0.8036980 3.0390205 0.0005538 HIP Lhx2 Mt-rnr2 - Ywhae 0.1799704 0.0389399 0
Atat1 0.1379310 0.7883542 2.5914572 0.0009902 HIP Lhx2 Mt-rnr2 - Ywhae 0.3218180 0.0422723 0
Gm9320 0.1034483 0.7842090 3.0104787 0.0005991 HIP Lhx2 Mt-rnr2 - Ywhae 0.1946995 0.0389399 0
Actr1a 0.2068966 0.7472897 2.0688331 0.0007973 HIP Lhx2 Mt-rnr2 - Ywhae 0.2591212 0.0422723 0
Thumpd1 0.1379310 0.7368977 2.4522218 0.0018064 HIP Lhx2 Mt-rnr2 - Ywhae 0.5870904 0.0587090 0
Atp2b2 0.1034483 0.7276133 2.8393011 0.0010414 HIP Lhx2 Mt-rnr2 - Ywhae 0.3384397 0.0422723 0
Eif3j1 0.1379310 0.7065817 2.4445512 0.0011706 HIP Lhx2 Mt-rnr2 - Ywhae 0.3804508 0.0422723 0
H3f3a-ps2 0.1034483 0.7054529 2.7267479 0.0024685 HIP Lhx2 Mt-rnr2 - Ywhae 0.8022644 0.0688796 0
Haus4 0.1034483 0.6603553 2.4885216 0.0083568 HIP Lhx2 Mt-rnr2 - Ywhae 1.0000000 0.1597618 0
Kif20b 0.1034483 0.6424168 2.5876788 0.0025432 HIP Lhx2 Mt-rnr2 - Ywhae 0.8265547 0.0688796 0
Mapk8ip2 0.1034483 0.6217329 2.3804171 0.0113320 HIP Lhx2 Mt-rnr2 - Ywhae 1.0000000 0.1767237 0
Exosc7 0.1034483 0.6141564 2.3689557 0.0114191 HIP Lhx2 Mt-rnr2 - Ywhae 1.0000000 0.1767237 0
Tars 0.1034483 0.5862509 2.3222166 0.0089848 HIP Lhx2 Mt-rnr2 - Ywhae 1.0000000 0.1622258 0
Top2a 0.2413793 0.5790346 1.5280961 0.0054365 HIP Lhx2 Mt-rnr2 - Ywhae 1.0000000 0.1359114 0
Abcb7 0.1379310 0.5546964 1.8614254 0.0249004 HIP Lhx2 Mt-rnr2 - Ywhae 1.0000000 0.2890222 0
Laptm4b 0.1034483 0.5470971 2.1403912 0.0220049 HIP Lhx2 Mt-rnr2 - Ywhae 1.0000000 0.2648732 0
Phf3 0.1379310 0.5463014 1.8789035 0.0180786 HIP Lhx2 Mt-rnr2 - Ywhae 1.0000000 0.2405292 0
Cisd1 0.1034483 0.5138696 1.9803311 0.0432259 HIP Lhx2 Mt-rnr2 - Ywhae 1.0000000 0.3696951 0
Gm10721 0.1034483 0.5106757 2.1881248 0.0060987 HIP Lhx2 Mt-rnr2 - Ywhae 1.0000000 0.1415775 0
Tmsb10 0.3793103 0.5032454 1.0347697 0.0079933 HIP Lhx2 Mt-rnr2 - Ywhae 1.0000000 0.1597618 0
Casp2 0.1034483 0.4997606 1.9856015 0.0326323 HIP Lhx2 Mt-rnr2 - Ywhae 1.0000000 0.3421131 0
Zcchc7 0.1034483 0.4985053 1.9703244 0.0383977 HIP Lhx2 Mt-rnr2 - Ywhae 1.0000000 0.3565500 0
Gm1113 0.1764706 3.2504143 9.1538572 0.0000000 STR Foxp1 Cdh23.var1 - Tubb5 0.0000000 0.0000000 1
Gcn1 0.4705882 2.1013192 3.5229587 0.0000000 STR Foxp1 Cdh23.var1 - Tubb5 0.0000000 0.0000000 1
Unkl 0.1176471 1.9793652 6.1973090 0.0000000 STR Foxp1 Cdh23.var1 - Tubb5 0.0000000 0.0000000 1
Gm4681 0.1176471 1.9730595 5.7755225 0.0000000 STR Foxp1 Cdh23.var1 - Tubb5 0.0000000 0.0000000 1
Tec 0.1176471 1.9551379 6.1444250 0.0000000 STR Foxp1 Cdh23.var1 - Tubb5 0.0000000 0.0000000 1
Tmem211 0.1176471 1.9278781 6.0900987 0.0000000 STR Foxp1 Cdh23.var1 - Tubb5 0.0000000 0.0000000 1
Pard3.var1 0.3529412 1.8825243 3.7093309 0.0000000 STR Foxp1 Cdh23.var1 - Tubb5 0.0000000 0.0000000 1
Ap1s3 0.1176471 1.6843233 5.1733961 0.0000000 STR Foxp1 Cdh23.var1 - Tubb5 0.0000008 0.0000001 1
Car5a 0.1176471 1.6747317 5.1712228 0.0000000 STR Foxp1 Cdh23.var1 - Tubb5 0.0000008 0.0000001 1
Itgbl1 0.1176471 1.6682208 5.1199482 0.0000000 STR Foxp1 Cdh23.var1 - Tubb5 0.0000008 0.0000001 1
Prr5l 0.1176471 1.6468855 5.3274743 0.0000000 STR Foxp1 Cdh23.var1 - Tubb5 0.0000000 0.0000000 1
Cops7b 0.1764706 1.6305270 4.2569625 0.0000000 STR Foxp1 Cdh23.var1 - Tubb5 0.0000067 0.0000005 1
Gm48370 0.1764706 1.6012635 4.1543684 0.0000000 STR Foxp1 Cdh23.var1 - Tubb5 0.0000283 0.0000016 1
Gm16223 0.2352941 1.5904893 3.7581500 0.0000000 STR Foxp1 Cdh23.var1 - Tubb5 0.0000034 0.0000003 1
Cbr3 0.2352941 1.4756456 3.5232183 0.0000001 STR Foxp1 Cdh23.var1 - Tubb5 0.0000475 0.0000025 1
Gm44509 0.1176471 1.4560279 4.5241806 0.0000004 STR Foxp1 Cdh23.var1 - Tubb5 0.0003030 0.0000112 1
Col4a5 0.2352941 1.4444406 3.4929520 0.0000001 STR Foxp1 Cdh23.var1 - Tubb5 0.0000530 0.0000026 1
4931429P17Rik 0.6470588 1.4421867 2.2000560 0.0000000 STR Foxp1 Cdh23.var1 - Tubb5 0.0000120 0.0000008 1
Odad4 0.1176471 1.4090353 4.6344751 0.0000000 STR Foxp1 Cdh23.var1 - Tubb5 0.0000287 0.0000016 1
Gm31698 0.1176471 1.4000030 4.4541897 0.0000005 STR Foxp1 Cdh23.var1 - Tubb5 0.0003349 0.0000120 1
Cit 0.1764706 1.3964436 3.8475986 0.0000002 STR Foxp1 Cdh23.var1 - Tubb5 0.0001110 0.0000044 1
Flt3 0.2941176 1.3686613 3.1045618 0.0000001 STR Foxp1 Cdh23.var1 - Tubb5 0.0000561 0.0000027 1
Pbld1 0.1176471 1.3608671 4.5111968 0.0000000 STR Foxp1 Cdh23.var1 - Tubb5 0.0000287 0.0000016 1
Cdk8 0.8823529 1.3390846 1.6068560 0.0000001 STR Foxp1 Cdh23.var1 - Tubb5 0.0000782 0.0000034 1
Cep128.var2 0.1176471 1.3377430 4.3782166 0.0000005 STR Foxp1 Cdh23.var1 - Tubb5 0.0003580 0.0000123 1


8.4 Heatmap of cell subtypes - log(CPM + 1)

8.5 Heatmap of cell subtypes - scale(log(CPM + 1))




9 Disclaimer

The analysis was performed through the non-profit and open-source pipeline JSEQ_scRNAseq. Remember, in silico analysis must be validated in vitro or in vivo. For more information, visit GitHub or contact us. JSEQ_scRNAseq was created at the Institute of Bioorganic Chemistry, Polish Academy of Sciences.